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--- start [2026/04/15 23:58] – [Integrarray QC Guidelines – November 25, 2025] 93.95.115.235
+++ start [2026/05/30 01:10] (current) – [7. Supplementary marker lists for relatedness assessment, duplicate detection, PCA, and ancestry analysis.] 206.192.168.18
@@ Line 192: / Line 192: @@
   *  **708,672** markers remaining after removing the filtered markers
   *  **632,677** markers retained after running the McCarthy Group Tool workflow against the TOPMed R3 reference panel
+===== 7. Supplementary marker lists for relatedness assessment, duplicate detection, PCA, and ancestry analysis. =====
+**{{ :marker.list.zip |}}**
+* ''marker.Low.Fst.unpruned.for.KING.txt'': This marker list contains unpruned pairwise low-FST markers among CEU, CHB, and YRI populations in GRCh38 build.
+* ''marker.Low.Fst.pruned.for.KING.txt'': This marker list contains pruned pairwise low-FST markers among CEU, CHB, and YRI populations in GRCh38 build. The pruning was performed using a mixed-population sample set of approximately 100,000 individuals.
+* ''marker.High.Fst.for.PCA.txt'': This marker list contains predefined high-FST markers for principal component analysis in GRCh38 build.
+* ''marker.2310.ancestry.txt'': This marker list contains 2,310 markers used by our group for ancestry analysis in GRCh38 build.